OpenMx Installation
AdminRobK
Joined: 01/24/2014
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If you are posting to ask for help with installing OpenMx, please understand that it is difficult for anyone to help you out if you don't provide a few key pieces of information! We therefore ask that your post include, at minimum, the following:
Ilaria
Joined: 07/22/2024
OpenMx Installation - cannot open the connection - 'failure when receiving data from the peer'
Hi OpenMx community,
I am very new to OpenMx. I am using it to fit saturated and ACE models to my twin data. I had successfully installed OpenMx using the script for the OpenMx website: source('https://vipbg.vcu.edu/vipbg/OpenMx2/software/getOpenMx.R')
But now when I am trying to re-run my models and use this version of openMx I receive the following error messages:
koudzo
Joined: 03/21/2024
installation problem of OpenMX3.9 and patch3.9.9 in Ubuntu 22.04
Hi,
I am trying to install the openMX3.9 + patch3.9.9 in my Ubuntu machine (22.04)
I got an error as below:
mpif90 -O3 -fopenmp -I./elpa-2018.05.001 -c elpa1.f90
/opt/intel/oneapi/mpi/2021.3.0/bin/mpif90: 729: [: Illegal number:
elpa1.f90:3345:62:
3345 | 2*n-1, 2*na, nblk, 2*nblk)
| 1
Error: Type mismatch in argument 'vmat_s' at (1); passed COMPLEX(8) to REAL(8)
elpa1.f90:3345:62:
gkirk
Joined: 10/24/2022
installation fails for openMX -> index not found
OS -> Ubuntu 22.04.3 LTS
R version 4.1.2 (2021-11-01)
error message:
Warning: unable to access index for repository https://vipbg.vcu.edu/vipbg/OpenMx2/software/src/contrib:
cannot open URL 'https://vipbg.vcu.edu/vipbg/OpenMx2/software/src/contrib/PACKAGES'
Warning message:
package ‘OpenMx’ is not available for this version of R
pasting https://vipbg.vcu.edu/vipbg/OpenMx2/software/src/contrib:
into a browser returns Page not found
a very similar error I found in the forum by Ling Ahu
gkirk
Joined: 10/24/2022
build fails fastLm.o
trying to install OpenMx with install.packages("OpenMx")
fails for RcppEigen with make fast.Lm.o error 1
machine is Scientific Linux version 7.9 (Nitrogen)
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Ling Zhu
Joined: 05/01/2023
Can't install OpenMx
1. My operating system: macOS Ventura Version 13.2.1
2. R version 4.3.0 (2023-4-21): I just updated my R version. I also used the older R version to install it but failed, so I think maybe update R could work...
3. Error message:
Warning in install.packages :
unable to access index for repository https://openmx.ssri.psu.edu/software/bin/macosx/big-sur-x86_64/contrib/4.3:
cannot open URL 'https://openmx.ssri.psu.edu/software/bin/macosx/big-sur-x86_64/contrib/4.3/PACKAGES'
Warning in install.packages :
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arinbasu
Joined: 06/09/2011
OpenMx fails to install under R-4.1.3 Linux, omp.h file not found error
I tried to install OpenMx in Void linux.
The R version is 4.1.3
(I have not installed 4.2.0 as it is not yet available on their servers and I did not want to install myself)
On install.packages("OpenMx"), it halts as it cannot find `omp.h` file.
However, `omp.h` file is present in the following location:
/usr/lib/clang/12.0.1/include/omp.h
How can I make sure that OpenMx installation can "see" this file?
Would greatly appreciate your guidance.
Best,
Arin
jhl12
Joined: 12/14/2020
Installing error on Stampede2
Dear Forum,
I have been trying to install OpenMx on the TACC Stampede2 server and it kept failing. Could you please help?
I need OpenMx primarily to use metaSEM package.
Here is the information you may need.
Platform: x86_64-pc-linux-gnu (64-bit)
R version 4.0.3 (2020-10-10)
I have tried: (1) install.packages(OpenMx) & (2) source('https://vipbg.vcu.edu/vipbg/OpenMx2/software/getOpenMx.R')
Both did not work. The main error message I received was:
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Daisy16
Joined: 06/25/2020
Which Linux is more suitable for installing OpenMX?
I want to install OpenMX on Linux, can anyone tell me which Linux is better?
Thanks
shenjean
Joined: 06/08/2020
Install OpenMx on server (Linux 4.14.35-1902.10.8.el7uek.x86_64 #2 SMP with R=3.5.1)
Hi,
I am having trouble installing OpenMx on a Linux server where I don't have admin rights. Here are my the details:
===============================
OS/Software versions
===============================
OS=Linux 4.14.35-1902.10.8.el7uek.x86_64 #2 SMP
conda environment
R=3.5.1
gcc=7.1.0
libgcc=7.2.0