- traceback() . Running "traceback() immediately after an error occurs will print out the sequence of function calls leading up to the error.

Output codes detail the cause of the error.

This status element is returned from the optimizer.

NA means that optimization was not attempted. For example, this status will be obtained if you only evaluate the fitfunction at one point,

mxComputeOnce('fitfunction', 'fit')

0 indicates a successful optimization--no error returned.

1 means that an optimal solution was found (like status 0), but that the sequence of iterates did not converge. In practice, this is the same as status 0, but involves slightly different criteria and is distinguished for technical reasons. This code is labeled (Mx status GREEN).

2 or 3 means that the box constraints or non-linear constraints, respectively, could not be satisfied.

4 means that the iteration limit was reached with no solution found. You can use mxOptions() to set a higher iteration limit, or just run mxRun() using the output—it will restart from the most recent set of estimates, and make another run of the same number of iterations.

5 means that the Hessian at the solution is not convex. There is likely a better solution, but the optimizer is stuck in a region of confusing geometry (like a saddle point).

6 means that gradient is not close enough to zero but the optimizer could find no way to improve the estimate. A variety of situations can lead to this outcome. Check whether the model is identified (mxCheckIdentification). It is also possible that gradients are just slightly larger than the arbitrary threshold used by OpenMx. The estimates resulting from this run MIGHT not be optimal estimates, and it would be risky to treat them as solutions without further investigation, so this code is labeled (Mx status RED). Sometimes re-running the model from its solution [firstRun <- mxRun(myModel) followed by secondRun <- mxRun(firstRun)] is sufficient to make code Red disappear.

7 means that the analytic derivatives are incorrect. This should be reported to developers.

9 means that an invalid parameter was passed to the optimizer. This should be reported to developers.

10 means that the parameter vector is outside the feasible set. This most often happens when the starting values are infeasible. Given feasible starting values, optimizer should under no circumstances escape the feasible set.

Any other status codes should be reported to developers.

output$status$status is zero unless there was an error in the backend.

The third element of status provides human readable information on what went wrong. Examples are:

- Look at your starting values. if you have used starting values 1s, you are building an initial expected covariance that is exactly singular. At the first iteration, OpenMx can't invert the expected covariance matrix, and crashes.
**Solution**: Try changing your starting values (say, by making all of the covariances and free regressions .5) and see if it runs.

*Note*, while R coders often use the period character inside variable names, this is not legal in OpenMx, which uses this character to specify the container model for variables.

R is saying that it found a "symbol" (a character) that is illegal in the context it was expecting: Perhaps you are trying to start a variable name with a number, or some other illegal character in that context.

R will give you a hint where: the error message includes the code as close as R can guess to where you made the typo. Let me google that for you: ah yes:

>> 0708smolts <- read.csv("myfile.csv", header=T, sep=",") > Error: unexpected symbol in "0708smolts"

Bit confusing: perhaps you think there's a bad symbol in the file, or the sep value is wrong, or...

But no: Look at the error: something is wrong with "0708smolts". What could it be? yip... programs that do math don't like it when you try and start a variable name with a digit.

FYI, try and avoid using mathematical symbols in names as well: what would you do if were a calculator and you got told "young-man = woman"? That's right, attempt to subtract set man to woman, then subtract the result from young...

- Variations include:

- Error in single.na(to) : argument is missing, with no default

- Examples:
- leading comma

to = c(,'x','y','z')

- trailing comma

mxMatrix("Name", nrow = 3,ncol=3,free=TRUE, values=.5,)

- Cure: remove the errant comma(s).

- Whenever you see NAs being introduced by coercion, suspect that you have the wrong type of value for a parameter: For instance, perhaps you are setting a number to string or vice versa... the coercion will fail, leaving an NA, which R warns you about.
- Example:

*#You say:*mxMatrix(type = "Full", nrow = 1, ncol = 1, free = FALSE, values = "l1", labels = "aa", lbound = 0, ubound = 2, name = "la"),

- The error:

Warning messages: 1: In convertVFN(values, free, labels, lbound, ubound, nrow, ncol) : NAs introduced by coercion...

- Solution: in this case, set the value to a numeric, (and remember that to equate values, you set the labels to be the same)

We try and convert the character "l1" to a numeric **value**, can't, return an NA... hence the error: NAs induced by coercion.

Error: The expected means matrix associated with the FIML objective function in model 'univSat4' does not contain dimnames.

- These errors occur when the mxFIMLObjective has no dimnames for the covariance or means, and cannot find them elsewhere (i.e., in the target algebra).
- Example

model <- mxModel("univSat4", mxMatrix(type = "Symm", nrow=1, ncol=1, free=T, values=1, name="expCov"), mxMatrix(type = "Full", nrow=1, ncol=1, free=T, values=0, name="expMean"), mxData(observed = testData, type="raw"), mxFIMLObjective(covariance = "expCov", means="expMean") # triggers error ) fit = mxRun(model)

- Fixes
- Add dimnames to the covariance and means matrices:

mxMatrix("Symm", 1, 1, T, 1, name = "expCov", dimnames=list(selVars, selVars), mxMatrix("Full", 1,1, T, 0, name = "expMean", dimnames=list(selVars, selVars)),

- Add dimnames to the Objective

mxFIMLObjective(covariance = "expCov", means="expMean", dimnames=selVars)

- Add dimnames to the covariance and means matrices:

Suspect your start values, data, and mapping of model onto data. This model for instance will return an error with default start values

require(OpenMx) data(demoOneFactor) DV = "x4" threePred = c("x1", "x2", "x3") manifests = names(demoOneFactor) manifests = c(threePred, DV) dat = demoOneFactor[,manifests] fit1 = mxModel("base", type="RAM", latentVars = "G", manifestVars = manifests, mxPath(from = "G", arrows = 2, free = T), mxPath(from = manifests, arrows=2), # manifest variances mxPath(from = manifests, arrows=2, connect="unique.bivariate"), mxPath(from = manifests, to = "G"), mxData(cov(dat), type = "cov", numObs = 500) ) summary(mxRun(fit1, unsafe=T))

Starting the variances at their likely values will run.

fit1 = mxModel("base", type="RAM", latentVars = "G", manifestVars = manifests, mxPath(from = "G", arrows = 2, free = T), mxPath(from = manifests, arrows=2, values=diag(cov(dat))), # manifest variances mxPath(from = manifests, arrows=2, connect="unique.bivariate"), mxPath(from = manifests, to = "G"), mxData(cov(dat), type = "cov", numObs = 500) ) summary(mxRun(fit1, unsafe=T))

- Log in or register to post comments
- Talk
- Printer-friendly version