OpenMx Help
pgseye
Joined: 10/13/2009
Error using definition variables
Hi,
I'm wanting to add 3 covariates to a saturated model. One of them (age) seems to work fine, but when I try to use either of the other two individually (birthweight or gestation time), I get an error message:
> univTwinSatFit <- mxRun(univTwinSatModel)
Running univTwinSat
Error in mxRun(univTwinSatModel) :
Error NYI: Missing Definition Vars Not Yet Implemented.
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spanosal
Joined: 06/02/2010
Error Message
I am running a trivariate model using a script from the workshop this year (thanks for that!) but keep getting the same error message. It comes when I try to run the Fit Multivariate ACE Model using Cholesky Decomposition portion of the script. The error message is as follows:
multACEFit <- mxRun(multACEModel)
Running multACE
Error in gzfile(file, mode) : cannot open the connection
In addition: Warning message:
In gzfile(file, mode) :
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mkeller
Joined: 08/04/2009
error message in trying to fit a var/covar matrix
Hi all,
I appreciate the speedy help that comes with posting on the forums here.
I have two separate problems so thought I'd post them both here:
PROBLEM 1: I'm trying to fit a model using var/cov matrices rather than raw data, as suggested by Steve in an earlier post (in order to get rough ideas of good start values for later FIML fitting). However, I get the following error message (pasted before it is the last bit of the script so you can see how I set up the Objective functions
+ ),
+ mxModel("DZOS",
Janosch
Joined: 05/10/2010
"as.matrix" in openmx
Hi everybody,
I have a simple question that might be a bit stupid. But I can't find an equivalent to the 'as.matrix' command in R. I understand that 'rvectorize' is the equivalent to 'as.vector' so I'm surprised that I can't find the 'as.matrix' thing anywhere.
Or is it maybe not yet implemented in openmx?
Thanks for your help
Greetings
Jan
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Janosch
Joined: 05/10/2010
naming mxAlgebra objects automatically
Hello everyone,
i am trying to generate a model with several mxAlgebra objects in it. The thing is that they all have the same structure (except for one value), but must be assigned different names. Right now I'm specifying them seperately, so:
mxAlgebra(EVEC%*%(exp(1%x%EVA)-tempa)%*%solve(EVEC), name = "EXPd1"),
mxAlgebra(EVEC%*%(exp(2%x%EVA)-tempa)%*%solve(EVEC), name = "EXPd2"),
mxAlgebra(EVEC%*%(exp(3%x%EVA)-tempa)%*%solve(EVEC), name = "EXPd3"),
mxAlgebra(EVEC%*%(exp(4%x%EVA)-tempa)%*%solve(EVEC), name = "EXPd4"),
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jam86hk
Joined: 05/21/2010
Robust ML estimation in OpenMX
Dear all,
I am a new learner of OpenMX and R. I am interested to know if there is alternative estimation (robust ML such as Satorra-Bentler test statisitc, ADF/WLS by Browne) besides normal-theory ML?
Thank you!
Heining Cham
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mkeller
Joined: 08/04/2009
trying to speed up a gnarly script with lots of non-linear constraints - any ideas?
Hi all,
This probably won't be easy to answer given how vague the question is, but...
mailyn
Joined: 05/19/2010
why is -2LL value of nested model smaller than that of full model, and how to find the best start value
question1:
when I simulated the model, I found the -2LL value of some nested models (which had less estimate parameters than full model) were smaller than that of full model, without any "warning" in script. I think it is abnormal, and I have no idea why it happened, and could you give me some information or suggestion to solve this problem.
Thank you!
manu
Joined: 10/08/2009
another mxConstraint question
Dear all,
I have a large matrix (A), and I want to constrain certain submatrices within A to (let's say the product of) some smaller matrices. How can this be done in OpenMx?
I am looking for something like:
A <- mxMatrix("Full", 4, 4, labels = c("a","b",NA,NA,"c","d",NA,NA,NA,NA,"a","b",NA,NA,"c","d"), byrow = TRUE, free = TRUE, name = "AA")
B <- mxMatrix("Full", 2, 2, labels = c("w","x","y","z"), byrow = TRUE, free = TRUE, name = "BB")
C <- mxMatrix("Full", 2, 2, labels = c("w1","x1","y1","z1"), byrow = TRUE, free = TRUE, name = "CC")
mxConstraint(A[1:2,1:2] == B%*%C)
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Janosch
Joined: 05/10/2010
mxConstraint basics
Dear all,
I am trying to get a grip on the mxConstraint function. I played around with it a bit and encountered a strange thing. I fitted a model in which different parameters are constrained to be the same. When i specified this with the labels (i.e. both parameters are labeled "b11"), it worked fine.
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