OpenMx Help
bverhulst
Joined: 03/08/2010
Loading the snowfall Package
Hi All,
I am not sure that I should post this question here or on a more general R discussion board, but here goes.
I am trying to use the snowfall package with OpenMx to use the independent = TRUE function in the mxModel command.
I am able to load the snowfall package, but when I try sfInit(parallel=T, cpus=2) the computer is fed into an infinite loop.
The first time that this happened, Windows asked for special permission to go through the Firewall (which I allowed).
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carey
Joined: 10/19/2009
summary(MxModel) object
trying to put OpenMxGUI into a package, i ran into a problem with the object from summary(MxModel). for some reason, the object is of class "summary.mxmodel" when all of OpenMxGUI is input using source(). in the package, however, the object is of class "table."
this is what i get when i read in the code using "source" and run the model:
> head(summary(thisOMxModel)$parameters)
name matrix row col Estimate Std.Error
1
2
3
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Ryne
Joined: 07/31/2009
OpenMx source build failed on revision 1624
I received an error on the 'resave-data' option in my most recent source build on OS X 10.6.7 from revision 1624.
Ryne-Estabrook:trunk Ryne$ make clean install
rm -rf build/*
rm -rf models/passing/temp-files/*
rm -rf models/failing/temp-files/*
cd build; R CMD build --resave-data=no ..
Unknown option: resave-data
Usage: R CMD build [options] pkgdirs
Build R packages from package sources in the directories specified by
pkgdirs.
Options:
-h, --help print short help message and exit
-v, --version print version info and exit
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carey
Joined: 10/19/2009
dumbfounded (or dumb) on error message
perplexed over this:
> thisOMxModel <- mxRun(thisOMxModel)
Running testModel
Error in substituteOperators(as.list(retval)) :
internal error -3 in R_decompress1
In addition: Warning message:
In substituteOperators(as.list(retval)) :
restarting interrupted promise evaluation
to get the MxModel, go to:
http://psych.colorado.edu/~carey/OpenMxGUI/weirdErrorMessage.php
everything appears normal. e.g.,
> class(thisOMxModel$MZf@data@observed$Neglect1)
[1] "ordered" "factor"
> class(thisOMxModel$MZf@data@observed$Neglect2)
[1] "ordered" "factor"
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jlisic
Joined: 04/13/2011
Derivation of the Saturated Model Likelihood result.
Hi, I've been playing a bit around with SEM models and open-mx and I am having some trouble with derivation of the 'saturated -2 log likelihood' output provided by the summary screen.
Shouldn't the Saturated model be zero always except for some machine error? Instead it tends to be fairly close to a model with 1 degree of freedom.
I might be misunderstanding something but for the saturated model where the Implied model under this condition is equal to the Sample covariance matrix which should yield a discrepancy function of zero.
carey
Joined: 10/19/2009
MxMatrix object
(1) documentation for "mxMatrix" says "This functions [sic] creates a new MxMatrix object."
(2) documentation for "MxMatrix" says that it "is an S4 class."
consider:
> unit5 <- mxMatrix(name='unit5', type='Lower', nrow=2, free=FALSE, values=1)
> class(unit5)
[1] "LowerMatrix"
attr(,"package")
[1] "OpenMx"
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tbates
Joined: 07/31/2009
How to report your error: Attach the SCRIPT if possible
Help is much easier to provide if you
1. clearly state the error (quote it from the R output)
2. give the steps to reproduce
3. attach the script that generates the error
(can this please be made sticky so it sticks at the top of the list?)
MNivard
Joined: 12/09/2010
Error in FUN(X[[2L]], ...) : Could not find function with name + and 1 arguments
Running NucTwFam
Error in FUN(X[[2L]], ...) :
Could not find function with name + and 1 arguments
So it would appear from this error I am summing a matrixobject and empty space (hence the could not find a function for one sided summing???) in one of my mxAlgebra functions.
However I have extensively checked my code for a "+" in an maAlgebra function lead by or trailed by a non matrix object or just whitespace. I could not find such a occurence.
I am running OpenMX 1.0.6 in R 2.11
Any sugestions?
Michel
userzht
Joined: 02/19/2011
abnormally error
Hi, everyone.
I constructed a Cholesky ACE model. When I drop parameters, one submodel (after mxRun()) showed this error:
The job for model 'AE_Cholesky' exited abnormally with the error message: Objective function returned an infinite value.
How can I deal with it? (Other submodels of similar type which dropped different parameters did run.)
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carey
Joined: 10/19/2009
contingency tables
am embarrassed to ask this, but a prior post (openmx.psyc.virginia.edu/thread/602) talks of fitting threshold models to contingency tables, but i have been unsuccessful in finding either instructions or an example of how to do this without writing my own functions. any help?
greg
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