Installing error on Stampede2
jhl12
Joined: 12/14/2020
Dear Forum,
I have been trying to install OpenMx on the TACC Stampede2 server and it kept failing. Could you please help?
I need OpenMx primarily to use metaSEM package.
Here is the information you may need.
Platform: x86_64-pc-linux-gnu (64-bit)
R version 4.0.3 (2020-10-10)
I have tried: (1) install.packages(OpenMx) & (2) source('https://vipbg.vcu.edu/vipbg/OpenMx2/software/getOpenMx.R')
Both did not work. The main error message I received was:
[compilation aborted for omxMLFitFunction.cpp (code 2)
make: *** [omxMLFitFunction.o] Error 2
ERROR: compilation failed for package ‘OpenMx’
Warning message:
In install.packages(pkgs = c("OpenMx"), contriburl = contrib.url(repos, :
installation of package ‘OpenMx’ had non-zero exit status]
+ I also tried to use R version 3.5 in the server but didn't work as well.
Thank you so much!
Best,
Jihyun
complete output
You need to post the entire compile output, maybe as an attachment.
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In reply to complete output by AdminJosh
Output attached
Thank you for the comment.
I attached the terminal output after I did "install.packages("OpenMx")"
Thank you!
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icpc
I don't think anybody has tried to build with the proprietary Intel compiler. Try gcc
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In reply to icpc by AdminJosh
I've tried
I've tried, actually. I couldn't get it to work. I don't remember why exactly, but I think it had to do with lack of support for GNU-specific extensions to the C++ standard?
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In reply to I've tried by AdminRobK
Thank you!
Thank you for the comments. It sounds like it is not a simple problem. I may try to figure out other routes to make it work.
Thank you!
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