General SEM Discussions

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No user picture. dallyride Joined: 02/03/2013

OpenMx for just optimization

I've been trying to determine if OpenMx can be used to help with my optimization problem.

I'm very impressed with what I've read and am excited about the prospect of using it for my project. However, I'm not yet convinced it will help me do what I need and whether it is the right package for this work.

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Picture of user. Julia Joined: 03/29/2012

Positive Log-likelihood

Hi.

When fitting a univariate model with continuous moderator, I keep getting positive log-likelihood (and naturally negative -2LL). The main variable is log transformed BMI. As far as I understand this is caused due to its small SD (SD=0.13 with mean=3.13). I saw in one thread (http://openmx.psyc.virginia.edu/thread/329) that it is recommended to avoid using variables with small variance. Would it be advised to use original BMI variable instead of log-transformed despite its skewness (1.22 vs 0.62 of the log-transformed)?

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No user picture. fantabulous Joined: 12/29/2012

procedures (SEM)

please help,,i need the procedures/ step by step in doing structural equation modeling..this is for my thesis..i need ur help..i don't how to start..i have already the data..
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Picture of user. kspoon Joined: 06/17/2011

Using Correlation Matrices v. Raw Data as Input

While it's relevant for both the Behavioral Genetics and OpenMX General Help forums, the overall question is rather general so I figured it should be posted here.

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No user picture. Alex F. Bokov Joined: 10/04/2012

Survival model redux.

Our research group has done a wide variety of performance measurements on lab mice (running speed on treadmills, oxygen consumption, spontaneous activity, etc. etc. for each mouse). We also have survival and censoring information for each mouse. I believe that our measurements reflect several underlying biological processes that in turn determine the rate of aging in these animals.

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No user picture. lionfish Joined: 09/10/2012

Tutorial Model

Hello!
I've been working through Dorothy Bishop's tutorial, linked from this website here:
http://openmx.psyc.virginia.edu/wiki/ideas-simplified-manual-beginners-smb
or can be found in online form on her blog here:
http://dbtemp.blogspot.co.uk/2011/08/structural-equation-modeling-in-openmx.html

I found I was getting NaN std errors (see the comments at the bottom of the blog link above for the full discussion - I've paraphrased and extended the comments there in the question below).

Dorothy Bishop kindly replied with some suggestions, but thought that I should ask on this forum.

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No user picture. LearnSEM8 Joined: 08/14/2012

Relative importance of attributes in a structural model

Hi!

I have run a structural model and am interested in deriving relative importance for each of the attributes that drive interest in my ultimate dependent variable. Is this possible to do?

Below is the model summary -

ATT1, ATT2, ATT3, ATT4 formed a latent variables L1
ATT5, ATT6, ATT7, ATT8 formed a latent variables L2
L1 and L2 are correlated and are predictors of DEP

How can I find out the contribution of ATT1 to ATT8 in predicting DEP? Please let me know. Thanks in advance for your help.

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Picture of user. sbremer Joined: 11/08/2011

Assumptions for SEM

Hello everybody,

I looked trough the two papers indicated by citation('OpenMx') and could not find the assumptions on the data (indicators). Do they need to be centered around Zero and/or have variance of One? Where is that written down? I found literature with and without the above mentioned assumptions.

Thanks in advance!

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Picture of user. sbremer Joined: 11/08/2011

Reliability of indicators

Hei OpenMx-Community,

is there a way to measure the reliability of the indicators in a SEM?

Is it correct to standardise the run model by the function standardizeRAM(model) and computing the squares of the path coefficients/factor loadings (squared multiple correlation)?
I found the function standardizeRAM(model) here: http://openmx.psyc.virginia.edu/thread/1095

Thanks in advance!

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No user picture. fife Joined: 07/01/2010

Partial Correlation Model not Working?

I've been trying to replicate a model by Preacher (2006). I've enclosed the graphic of the model. And here's my code:

multiRegModelPr2 <- mxModel("Preacher 2",
type="RAM",
mxData(
observed=data,
type="raw"
),
manifestVars=c("x", "y", "z"),
latentVars = c("z1", "z2", "z3"),
# variance paths
mxPath(
from=c("x", "y", "z", "z1", "z2", "z3"),
arrows=2,
free=c(T,T,T,F,F,F),
values = c(.5, .5, .5, 1, 1, 1),
labels=c("d1", "d2", "d3", NA, NA, NA)
),
# covariance of x and z
mxPath(