OpenMx General Help

Posted on
No user picture. Leah Joined: 03/02/2012

Questions about Confidence Intervals

I am trying to get the confidence intervals for the free parameters in an ordinal ACE model. But it seems I screw it up. The range of confidence intervals is quite wide. So I have questions about confidence intervals in OpenMx.

How does OpenMx calculate the confidence intervals? I didn't get much information from 'OpenMx Manual' or 'OpenMx User Guide', but I found some in 'MxManual'. Are the principles of OpenMx and Mx same?

If it's just a silly code error, my code is below.

Any help would be appreciated!

univACEOrdModel <- mxModel("univACEOrd",
mxModel("ACE",

Posted on
No user picture. kzhang Joined: 02/29/2012

Model Keeps Running Forever (fails to terminate)

Hello,

First, thanks for providing such a useful software package!

Second, I am having some trouble getting my model to finish running, and since I have to manually stop the script, I don't get any helpful output that would help me debug. Please find attached my script.

Posted on
No user picture. dadrivr Joined: 01/19/2010

Include parameter estimates on .Dot plots from omxGraphviz()

After using omxGraphviz() to output a .Dot plot from my OpenMx model, I get a diagram of the model, but no parameter estimates are overlaid on the diagram. Is there a way to do this? Thanks in advance.
Posted on
Picture of user. wuhao_osu Joined: 09/07/2010

Are these available currently or soon?

Hi,

It would be very helpful if the following can be done in OpenMx:

1. Evaluate (for all cases at once) an mxAlgebra that involves definition variables. I think currently one can only evaluate such an mxAlgebra for a single case.

2. Define an user specified objective function that is the sum of a casewise function of the data and parameters. I think currently the casewise function can be defined with definition variables, but is there a way to sum them?

Posted on
No user picture. JWiley Joined: 03/25/2011

p-values from summary and mxCompare do not match

Specifically, I fit a model as well as a saturated model. When calling summary, I pass the -2LL and DF from the saturated model, with mxCompare, I compare my model with the saturated. Here are the results, everything else is as expected. Am I missing something?
from summary():
chi-square: 5.35
p: 1

from mxCompare():
minus2LL df AIC diffLL diffdf p
1 5318 742 3834 NA NA NA
2 5323 744 3835 5.35 2 0.0691

Posted on
Picture of user. suzannejak Joined: 01/06/2010

model name from output

I am writing a function that returns the standardized parameter estimates for multigroup models. I would like to start the output for each group with something like:

"standardized estimates [model name]"

However, I can not figure out how to extract the model name from the output. Is it possible to get it?

For example if the output object looks like below, how do I extract 'men2'?

MxModel 'men2'
type : default
@matrices : 'L', 'F', 'Q', 'T', and 'K'
@algebras : 'S' and 'M'
@constraints :
@intervals :
@latentVars : none
@manifestVars : none
@data : 5 x 5

Posted on
No user picture. mrubin Joined: 10/28/2011
Posted on
Picture of user. carey Joined: 10/19/2009

on mxOption()

this is a reply to mike spiegal's comments in the 'mxOption "Cold Start"' thread about the NPSOL options that should be implemented in OpenMx.

Posted on
Picture of user. carey Joined: 10/19/2009

mxOption "Cold Start"

reran some old scripts that used to run fine, but under 1.1 the statement
mxOption(thisOMxModel, "Cold Start", "")
now gives the error
"argument 'key' has a value 'Cold Start' that cannot be found in getOption('mxOptions')"

has that been deprecated?

greg

Posted on
Picture of user. kspoon Joined: 06/17/2011

Question Regarding Joint Ordinal-Continuous Thresholds/Standard Errors

With the release of OpenMx 1.1, I started playing around with the new joint ordinal-continuous feature. We had just done a bivariate ACE model for two phenotypes (one ordinal, 3 levels, and one continuous, which we divided into 10 levels) using Classic Mx.