In the help file for mxFactorScores, it says:
The rows are in the order of the sorted data.
I'm not sure what this means. The data I have is in order by date and it's clear that the estimated factor scores for "ML" are no longer in the same order. There are two correlated factors each with 2 indicators (and nothing else). How can I get the factor scores into the same order as the rest of the data?
BTW, I'm using OpenMx 2.3.1 under R 3.2.2 (Ubuntu 15.04). mxFactorScores does not work with the RAM model so I converted it to LISREL in order to get the factor scores. (I had this problem before but I don't remember if it was ever resolved.)