* installing to library ‘/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3’ * installing *source* package ‘OpenMx’ ... NOTE: ./configure is not an autoconf generated script. Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars ** libs g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Compute.cpp -o Compute.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ComputeGD.cpp -o ComputeGD.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ComputeNM.cpp -o ComputeNM.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ComputeNR.cpp -o ComputeNR.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ComputeSD.cpp -o ComputeSD.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c FellnerFitFunction.cpp -o FellnerFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MarkovExpectation.cpp -o MarkovExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MarkovFF.cpp -o MarkovFF.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ba81quad.cpp -o ba81quad.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dmvnorm.cpp -o dmvnorm.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitMultigroup.cpp -o fitMultigroup.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c general.c -o general.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glue.cpp -o glue.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.cpp -o matrix.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c merge.cpp -o merge.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nanotimer.cpp -o nanotimer.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nloptcpp.cpp -o nloptcpp.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxAlgebra.cpp -o omxAlgebra.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxData.cpp -o omxData.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxExpectation.cpp -o omxExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxExpectationBA81.cpp -o omxExpectationBA81.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxExportBackendState.cpp -o omxExportBackendState.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxFIMLSingleIteration.cpp -o omxFIMLSingleIteration.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxFitFunction.cpp -o omxFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxFitFunctionBA81.cpp -o omxFitFunctionBA81.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxGREMLExpectation.cpp -o omxGREMLExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxGREMLfitfunction.cpp -o omxGREMLfitfunction.o omxGREMLfitfunction.cpp: In member function ‘virtual void omxGREMLFitState::compute(int, FitContext*)’: omxGREMLfitfunction.cpp:260:12: warning: declaration of ‘logdetV’ shadows a previous local [-Wshadow] double logdetV=0, logdetquadX=0; ^~~~~~~ omxGREMLfitfunction.cpp:199:10: note: shadowed declaration is here double logdetV=0, logdetquadX=0, ytPy=0; ^~~~~~~ omxGREMLfitfunction.cpp:260:23: warning: declaration of ‘logdetquadX’ shadows a previous local [-Wshadow] double logdetV=0, logdetquadX=0; ^~~~~~~~~~~ omxGREMLfitfunction.cpp:199:21: note: shadowed declaration is here double logdetV=0, logdetquadX=0, ytPy=0; ^~~~~~~~~~~ omxGREMLfitfunction.cpp:261:21: warning: declaration of ‘Vinv’ shadows a previous local [-Wshadow] Eigen::MatrixXd Vinv, quadX; ^~~~ omxGREMLfitfunction.cpp:195:33: note: shadowed declaration is here Eigen::Map< Eigen::MatrixXd > Vinv(omxMatrixDataColumnMajor(gff->invcov), gff->invcov->rows, gff->invcov->cols); ^~~~ omxGREMLfitfunction.cpp:352:6: warning: declaration of ‘i’ shadows a previous local [-Wshadow] int i=0, hrn=0, hcn=0, a1=0, a2=0, r=0, c=0; ^ omxGREMLfitfunction.cpp:193:7: note: shadowed declaration is here int i; ^ omxGREMLfitfunction.cpp:408:6: warning: declaration of ‘i’ shadows a previous local [-Wshadow] int i=0, hrn=0, hcn=0, a1=0, a2=0, r=0, c=0, inielem=0; ^ omxGREMLfitfunction.cpp:193:7: note: shadowed declaration is here int i; ^ omxGREMLfitfunction.cpp:472:6: warning: declaration of ‘i’ shadows a previous local [-Wshadow] int i=0, j=0, t1=0, t2=0, a1=0, a2=0, r=0, c=0; ^ omxGREMLfitfunction.cpp:193:7: note: shadowed declaration is here int i; ^ g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxHessianCalculation.cpp -o omxHessianCalculation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxImportFrontendState.cpp -o omxImportFrontendState.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxLISRELExpectation.cpp -o omxLISRELExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxMLFitFunction.cpp -o omxMLFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxMatrix.cpp -o omxMatrix.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxNPSOLSpecific.cpp -o omxNPSOLSpecific.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxNormalExpectation.cpp -o omxNormalExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxRAMExpectation.cpp -o omxRAMExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxRFitFunction.cpp -o omxRFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxRowFitFunction.cpp -o omxRowFitFunction.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxState.cpp -o omxState.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxStateSpaceExpectation.cpp -o omxStateSpaceExpectation.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxSymbolTable.cpp -o omxSymbolTable.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c omxWLSFitFunction.cpp -o omxWLSFitFunction.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o gfortran -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -c sadmvn.f -o sadmvn.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slsqp.c -o slsqp.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssMLFit.cpp -o ssMLFit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stop.c -o stop.o g++ -I/usr/share/R/include -DNDEBUG -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/rpf/include" -fopenmp -Wall -Wno-unknown-pragmas -Wno-unused-parameter -Wvla -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-unused-function -fdiagnostics-color=auto -DEXTRA_GCC_DIAG -Wno-misleading-indentation -Wno-pragmas -Wno-ignored-attributes -Wno-misleading-indentation -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subnp.cpp -o subnp.o subnp.cpp: In member function ‘void CSOLNP::solnp(double*, int)’: subnp.cpp:187:37: warning: declaration of ‘ineqv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd ineqv_e(nineq); ^ subnp.cpp:114:24: note: shadowed declaration is here Eigen::RowVectorXd ineqv_e(fit.inequality.size()); ^~~~~~~ subnp.cpp:332:42: warning: declaration of ‘onesMatrix’ shadows a previous local [-Wshadow] Eigen::RowVectorXd onesMatrix(1, p_e.size()); onesMatrix.setOnes(); ^ subnp.cpp:287:28: note: shadowed declaration is here Eigen::RowVectorXd onesMatrix(1, p_e.size()); onesMatrix.setOnes(); ^~~~~~~~~~ subnp.cpp:333:32: warning: declaration of ‘vscale_t’ shadows a previous local [-Wshadow] Eigen::RowVectorXd vscale_t = vscale_e; ^~~~~~~~ subnp.cpp:288:28: note: shadowed declaration is here Eigen::RowVectorXd vscale_t = vscale_e; ^~~~~~~~ subnp.cpp: In member function ‘void CSOLNP::subnp(Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::MatrixBase&, double, Eigen::MatrixBase&, const Eigen::Array&, int)’: subnp.cpp:512:9: warning: declaration of ‘neq’ shadows a member of ‘CSOLNP’ [-Wshadow] int neq = fit.equality.size(); ^~~ subnp.cpp:32:9: note: shadowed declaration is here int neq, nineq; ^~~ subnp.cpp:513:9: warning: declaration of ‘nineq’ shadows a member of ‘CSOLNP’ [-Wshadow] int nineq; ^~~~~ subnp.cpp:32:14: note: shadowed declaration is here int neq, nineq; ^~~~~ subnp.cpp:914:25: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = ob_e.block(0, 1, 1, nc); ^~~~~~~~ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:982:37: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = obm_e.block(0, 1, 1, nc); ^~~~~~~~ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:1209:29: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = ob3_e.block(0, 1, 1, nc); ^~~~~~~~ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:1224:29: warning: declaration of ‘tmpv_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd tmpv_e = ptt_e.col(1).transpose().block(0, nineq, 1, npic - nineq).cwiseProduct(vscale_e.block(0, nc+1, 1, np)); ^~~~~~ subnp.cpp:1166:25: note: shadowed declaration is here Eigen::MatrixXd tmpv_e = pttCol.transpose().block(0, nineq, 1, npic - nineq).cwiseProduct(vscale_e.block(0, nc+1, 1, np)); ^~~~~~ subnp.cpp:1247:40: warning: declaration of ‘firstPart_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd firstPart_e(1, 1 + neq + nineq); ^ subnp.cpp:1187:25: note: shadowed declaration is here Eigen::MatrixXd firstPart_e(1, 1 + neq + nineq); ^~~~~~~~~~~ subnp.cpp:1248:38: warning: declaration of ‘funv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd funv_e(1); funv_e[0] = funv; ^ subnp.cpp:1188:28: note: shadowed declaration is here Eigen::RowVectorXd funv_e(1); funv_e[0] = funv; ^~~~~~ subnp.cpp:1249:41: warning: declaration of ‘eqv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd eqv_e(neq); eqv_e = fit.equality; ^ subnp.cpp:1189:28: note: shadowed declaration is here Eigen::RowVectorXd eqv_e(neq); eqv_e = fit.equality; ^~~~~ subnp.cpp:1250:45: warning: declaration of ‘ineqv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd ineqv_e(nineq); ineqv_e= -fit.inequality; ^ subnp.cpp:1190:28: note: shadowed declaration is here Eigen::RowVectorXd ineqv_e(nineq); ineqv_e= -fit.inequality; ^~~~~~~ subnp.cpp:1254:32: warning: declaration of ‘secondPart_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd secondPart_e; ^~~~~~~~~~~~ subnp.cpp:1194:28: note: shadowed declaration is here Eigen::RowVectorXd secondPart_e; ^~~~~~~~~~~~ subnp.cpp:1269:33: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = ob2_e.block(0, 1, 1, nc); ^~~~~~~~ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:1348:16: warning: declaration of ‘reduce’ shadows a previous local [-Wshadow] double reduce = (j - obn) / ((double)1.0 + (double)fabs(j)); ^~~~~~ subnp.cpp:680:16: note: shadowed declaration is here double go, reduce = 1e-300; ^~~~~~ subnp.cpp: In instantiation of ‘void CSOLNP::subnp(Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::MatrixBase&, double, Eigen::MatrixBase&, const Eigen::Array&, int) [with T1 = Eigen::Matrix; T2 = Eigen::Matrix]’: subnp.cpp:303:78: required from here subnp.cpp:512:34: warning: declaration of ‘neq’ shadows a member of ‘CSOLNP’ [-Wshadow] int neq = fit.equality.size(); ^ subnp.cpp:32:9: note: shadowed declaration is here int neq, nineq; ^~~ subnp.cpp:513:9: warning: declaration of ‘nineq’ shadows a member of ‘CSOLNP’ [-Wshadow] int nineq; ^~~~~ subnp.cpp:32:14: note: shadowed declaration is here int neq, nineq; ^~~~~ subnp.cpp:914:58: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = ob_e.block(0, 1, 1, nc); ^ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:982:71: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = obm_e.block(0, 1, 1, nc); ^ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:1209:63: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = ob3_e.block(0, 1, 1, nc); ^ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:1224:139: warning: declaration of ‘tmpv_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd tmpv_e = ptt_e.col(1).transpose().block(0, nineq, 1, npic - nineq).cwiseProduct(vscale_e.block(0, nc+1, 1, np)); ^ subnp.cpp:1166:25: note: shadowed declaration is here Eigen::MatrixXd tmpv_e = pttCol.transpose().block(0, nineq, 1, npic - nineq).cwiseProduct(vscale_e.block(0, nc+1, 1, np)); ^~~~~~ subnp.cpp:1247:59: warning: declaration of ‘firstPart_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd firstPart_e(1, 1 + neq + nineq); ^ subnp.cpp:1187:25: note: shadowed declaration is here Eigen::MatrixXd firstPart_e(1, 1 + neq + nineq); ^~~~~~~~~~~ subnp.cpp:1248:40: warning: declaration of ‘funv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd funv_e(1); funv_e[0] = funv; ^ subnp.cpp:1188:28: note: shadowed declaration is here Eigen::RowVectorXd funv_e(1); funv_e[0] = funv; ^~~~~~ subnp.cpp:1249:41: warning: declaration of ‘eqv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd eqv_e(neq); eqv_e = fit.equality; ^ subnp.cpp:1189:28: note: shadowed declaration is here Eigen::RowVectorXd eqv_e(neq); eqv_e = fit.equality; ^~~~~ subnp.cpp:1250:45: warning: declaration of ‘ineqv_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd ineqv_e(nineq); ineqv_e= -fit.inequality; ^ subnp.cpp:1190:28: note: shadowed declaration is here Eigen::RowVectorXd ineqv_e(nineq); ineqv_e= -fit.inequality; ^~~~~~~ subnp.cpp:1254:32: warning: declaration of ‘secondPart_e’ shadows a previous local [-Wshadow] Eigen::RowVectorXd secondPart_e; ^~~~~~~~~~~~ subnp.cpp:1194:28: note: shadowed declaration is here Eigen::RowVectorXd secondPart_e; ^~~~~~~~~~~~ subnp.cpp:1269:67: warning: declaration of ‘result_e’ shadows a previous local [-Wshadow] Eigen::MatrixXd result_e = ob2_e.block(0, 1, 1, nc); ^ subnp.cpp:606:21: note: shadowed declaration is here Eigen::MatrixXd result_e; ^~~~~~~~ subnp.cpp:1348:67: warning: declaration of ‘reduce’ shadows a previous local [-Wshadow] double reduce = (j - obn) / ((double)1.0 + (double)fabs(j)); ^ subnp.cpp:680:16: note: shadowed declaration is here double go, reduce = 1e-300; ^~~~~~ g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o OpenMx.so Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matrix.o merge.o nanotimer.o nloptcpp.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFIMLSingleIteration.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o omxRowFitFunction.o omxState.o omxStateSpaceExpectation.o omxSymbolTable.o omxWLSFitFunction.o optimize.o options.o sadmvn.o slsqp.o ssMLFit.o stop.o subnp.o -fopenmp -lgfortran -lm -lquadmath -lblas -llapack -L../src -lnpsol -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR mkdir -p ../inst/debug cp *.gcno ../inst/debug/ cp: cannot stat '*.gcno': No such file or directory Makevars:47: recipe for target 'save-gcno' failed make: [save-gcno] Error 1 (ignored) installing to /home/mpib/krause/R/x86_64-pc-linux-gnu-library/3.3/OpenMx/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘nrow’ from package ‘base’ in package ‘OpenMx’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘OpenMx’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (OpenMx) R -f test.R 2>&1 | tee -a ~/OpenMx.install.log R version 3.3.3 (2017-03-06) -- "Another Canoe" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require(OpenMx) Loading required package: OpenMx To take full advantage of multiple cores, use: mxOption(NULL, 'Number of Threads', parallel::detectCores()) #now Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx) > > data(demoOneFactor) > nvar <- ncol(demoOneFactor) > varnames <- colnames(demoOneFactor) > ssModel <- mxModel(model="State Space Manual Example", + mxMatrix("Full", 1, 1, TRUE, .3, name="A"), + mxMatrix("Zero", 1, 1, name="B"), + mxMatrix("Full", nvar, 1, TRUE, .6, name="C", dimnames=list(varnames, "F1")), + mxMatrix("Zero", nvar, 1, name="D"), + mxMatrix("Diag", 1, 1, FALSE, 1, name="Q"), + mxMatrix("Diag", nvar, nvar, TRUE, .2, name="R"), + mxMatrix("Zero", 1, 1, name="x0"), + mxMatrix("Diag", 1, 1, FALSE, 1, name="P0"), + mxMatrix("Zero", 1, 1, name="u"), + mxData(observed=demoOneFactor[1:100,], type="raw"),#fewer rows = fast + mxExpectationStateSpace("A", "B", "C", "D", "Q", "R", "x0", "P0", "u"), + mxFitFunctionML() + ) > mxOption(NULL, 'Default optimizer', 'NPSOL') > ssRun <- mxRun(ssModel) Running State Space Manual Example with 11 parameters Error in runHelper(model, frontendStart, intervals, silent, suppressWarnings, : BLAS/LAPACK routine ' DGEQR' gave error code -6 Calls: mxRun -> runHelper Execution halted