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Type 'q()' to quit R. > sink("OpenMx.install.log") > source('http://openmx.psyc.virginia.edu/getOpenMx.R') trying URL 'http://openmx.psyc.virginia.edu/packages/src/contrib/OpenMx_0.2.5-1050.tar.gz' Content type 'application/x-gzip' length 4555680 bytes (4.3 Mb) opened URL ================================================== downloaded 4.3 Mb * installing *source* package 'OpenMx' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc is installed... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking if gcc accepts -dumpversion option... yes checking gcc version... 4.1.2 checking for gawk... gawk checking for inst/npsol/linux/x86_64/gcc4.1/libnpsol.a... yes configure: creating ./config.status config.status: creating src/Makevars config.status: executing src/omxSymbolTable.h commands config.status: executing src/omxSymbolTable.c commands ** libs gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c npsolWrap.c -o npsolWrap.o In file included from npsolWrap.c:23: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxState.h:44, from npsolWrap.c:26: omxSymbolTable.h:57:7: warning: no newline at end of file npsolWrap.c: In function 'callNPSOL': npsolWrap.c:579: warning: 'names' may be used uninitialized in this function npsolWrap.c:579: warning: 'ans' may be used uninitialized in this function gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxAlgebra.c -o omxAlgebra.o In file included from omxMatrix.h:39, from omxAlgebra.c:30: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebra.c:30: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxAlgebraFunctions.c -o omxAlgebraFunctions.o In file included from omxMatrix.h:39, from omxAlgebraFunctions.h:26, from omxAlgebraFunctions.c:30: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebraFunctions.h:26, from omxAlgebraFunctions.c:30: omxSymbolTable.h:57:7: warning: no newline at end of file omxAlgebraFunctions.c: In function 'omxMatrixDeterminant': omxAlgebraFunctions.c:539: warning: too few arguments for format omxAlgebraFunctions.c: In function 'omxMatrixFromDiagonal': omxAlgebraFunctions.c:723: warning: unused variable 'value' omxAlgebraFunctions.c: In function 'omxMultivariateNormalIntegration': omxAlgebraFunctions.c:985: warning: passing argument 2 of 'omxStandardizeCovMatrix' from incompatible pointer type omxAlgebraFunctions.c:985: warning: passing argument 3 of 'omxStandardizeCovMatrix' from incompatible pointer type omxAlgebraFunctions.c:1051:2: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxAlgebraObjective.c -o omxAlgebraObjective.o In file included from omxMatrix.h:39, from omxAlgebraFunctions.h:26, from omxAlgebraObjective.c:17: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebraFunctions.h:26, from omxAlgebraObjective.c:17: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxData.c -o omxData.o In file included from omxData.h:39, from omxData.c:27: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxData.h:43, from omxData.c:27: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxFIMLObjective.c -o omxFIMLObjective.o In file included from omxFIMLObjective.c:23: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebraFunctions.h:26, from omxFIMLObjective.c:24: omxSymbolTable.h:57:7: warning: no newline at end of file omxFIMLObjective.c: In function 'omxInitFIMLObjective': omxFIMLObjective.c:618: warning: assignment from incompatible pointer type gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxMLObjective.c -o omxMLObjective.o In file included from omxMatrix.h:39, from omxAlgebraFunctions.h:26, from omxMLObjective.c:23: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebraFunctions.h:26, from omxMLObjective.c:23: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxMatrix.c -o omxMatrix.o In file included from omxMatrix.h:39, from omxMatrix.c:28: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxMatrix.c:28: omxSymbolTable.h:57:7: warning: no newline at end of file omxMatrix.h:123: warning: 'omxRecompute' declared inline after being called omxMatrix.h:123: warning: previous declaration of 'omxRecompute' was here gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxObjective.c -o omxObjective.o In file included from omxObjective.h:38, from omxObjective.c:31: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxObjective.h:43, from omxObjective.c:31: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxObjectiveTable.c -o omxObjectiveTable.o In file included from omxMatrix.h:39, from omxSymbolTable.h:10, from omxObjectiveTable.c:23: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxSymbolTable.h:10, from omxObjectiveTable.c:23: omxSymbolTable.h:57:7: warning: no newline at end of file In file included from omxObjectiveTable.c:23: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxRAMObjective.c -o omxRAMObjective.o In file included from omxObjective.h:38, from omxObjectiveTable.h:29, from omxRAMObjective.c:17: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxObjective.h:43, from omxObjectiveTable.h:29, from omxRAMObjective.c:17: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxRObjective.c -o omxRObjective.o In file included from omxMatrix.h:39, from omxAlgebraFunctions.h:26, from omxRObjective.c:23: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebraFunctions.h:26, from omxRObjective.c:23: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxRowObjective.c -o omxRowObjective.o In file included from omxRowObjective.c:23: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxAlgebraFunctions.h:26, from omxRowObjective.c:24: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxState.c -o omxState.o In file included from omxState.h:37, from omxState.c:27: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxState.h:44, from omxState.c:27: omxSymbolTable.h:57:7: warning: no newline at end of file gcc -std=gnu99 -I/home/wilde/R/pads/lib64/R/include -I/usr/local/include -Wall -fpic -g -O2 -c omxSymbolTable.c -o omxSymbolTable.o In file included from omxMatrix.h:39, from omxSymbolTable.h:10, from omxSymbolTable.c:7: omxDefines.h:73:28: warning: no newline at end of file In file included from omxAlgebra.h:42, from omxMatrix.h:43, from omxSymbolTable.h:10, from omxSymbolTable.c:7: omxSymbolTable.h:57:7: warning: no newline at end of file In file included from omxSymbolTable.c:7: omxSymbolTable.h:57:7: warning: no newline at end of file omxSymbolTable.c:46:3: warning: no newline at end of file gfortran -fpic -g -O -c sadmvn.f -o sadmvn.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o OpenMx.so npsolWrap.o omxAlgebra.o omxAlgebraFunctions.o omxAlgebraObjective.o omxData.o omxFIMLObjective.o omxMLObjective.o omxMatrix.o omxObjective.o omxObjectiveTable.o omxRAMObjective.o omxRObjective.o omxRowObjective.o omxState.o omxSymbolTable.o sadmvn.o -lgfortran -lm -L/home/wilde/R/pads/lib64/R/lib -lRblas -L/home/wilde/R/pads/lib64/R/lib -lRlapack -lnpsol -L../inst/npsol/linux/x86_64/gcc4.1 -lgfortran -lm -L/home/wilde/R/pads/lib64/R/lib -lR ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading Creating a new generic function for "print" in "OpenMx" Creating a new generic function for "nrow" in "OpenMx" Creating a new generic function for "ncol" in "OpenMx" Creating a new generic function for "summary" in "OpenMx" ** help *** installing help indices ** building package indices ... * DONE (OpenMx) Updating HTML index of packages in '.Library' >