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Hi Tim,
Can you add omxCheckCloseEnough() statements to OneFactorMatrixDemo.R and TwinAnalysis_Multivariate_Matrix_Raw.R? There may be a bug in the way the optimizer handles the second demo, but we can't be certain until we know what the correct answer is supposed to be. Also I went ahead and made some R style changes to TwinAnalysis_Multivariate_Matrix_Raw.R. Until we get an OpenMx wiki page on R style guidelines, use the Google R style guide: http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html, particularly items (7) and (8).