Hi
I'm running into a glitch when installing under Ubuntu 9.04 (64 bit) with R 2.9.2
- I used the source statement from the email dated Aug 17
Error and R.version() are included below
-Sarah
Loading Tcl/Tk interface ... done
Warning in install.packages("snowfall") :
argument 'lib' is missing: using '/usr/local/lib/R/site-library'
Warning in install.packages("snowfall") :
'lib = "/usr/local/lib/R/site-library"' is not writable
Would you like to create a personal library
'~/R/x86_64-pc-linux-gnu-library/2.9'
to install packages into? (y/n) y
also installing the dependency ‘snow’
trying URL 'http://cran.mtu.edu/src/contrib/snow_0.3-3.tar.gz'
Content type 'application/x-gzip' length 18618 bytes (18 Kb)
opened URL
downloaded 18 Kb
trying URL 'http://cran.mtu.edu/src/contrib/snowfall_1.70.tar.gz'
Content type 'application/x-gzip' length 184206 bytes (179 Kb)
opened URL
downloaded 179 Kb
- Installing source package ‘snow’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'snow'
Formats: text html latex example
snow-cluster text html latex example
snow-internal text html latex
snow-parallel text html latex example
snow-rand text html latex example
snow-startstop text html latex example
** building package indices ... - DONE (snow)
- Installing source package ‘snowfall’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'snowfall'
Formats: text html latex example
snowfall-a-package text html latex example
snowfall-b-init text html latex example
snowfall-c-calculation text html latex example
snowfall-d-tools text html latex example
snowfall-e-data text html latex
** building package indices ... - DONE (snowfall)
The downloaded packages are in
‘/tmp/RtmpqUuI7K/downloaded_packages’
Warning in install.packages(pkgs = c("OpenMx"), repos = repos) :
argument 'lib' is missing: using '/home/indigo/R/x86_64-pc-linux-gnu-library/2.9'
trying URL 'https://openmx.ssri.psu.edu/packages/src/contrib/OpenMx_0.1.3-776.tar.gz'
Content type 'application/x-gzip' length 2920075 bytes (2.8 Mb)
opened URL
downloaded 2.8 Mb
- Installing source package ‘OpenMx’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc is installed... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking if gcc accepts -dumpversion option... yes
checking gcc version... 4.3.3
checking for gawk... /usr/bin/awk
checking for inst/npsol/linux/x86_64/gcc4.3/libnpsol.a... no
configure: error: npsol library not found
ERROR: configuration failed for package ‘OpenMx’ - Removing ‘/home/indigo/R/x86_64-pc-linux-gnu-library/2.9/OpenMx’
The downloaded packages are in
‘/tmp/RtmpqUuI7K/downloaded_packages’
Warning message:
In install.packages(pkgs = c("OpenMx"), repos = repos) :
installation of package 'OpenMx' had non-zero exit status
#
> R.Version()
$platform
[1] "x86_64-pc-linux-gnu"
$arch
[1] "x86_64"
$os
[1] "linux-gnu"
$system
[1] "x86_64, linux-gnu"
$status
[1] ""
$major
[1] "2"
$minor
[1] "9.2"
$year
[1] "2009"
$month
[1] "08"
$day
[1] "24"
$svn rev
[1] "49384"
$language
[1] "R"
$version.string
[1] "R version 2.9.2 (2009-08-24)"